PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA11G0160400.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 278aa MW: 30058.3 Da PI: 9.0904

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA11G0160400.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.1	2.1e-05	47	93	1	51
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 +++ + erE+ Rd++N+ f eL ++l + + Ka++L A + + ORGLA11G0160400.1 47 KKTHKAEREKLKRDQLNDLFVELSSMLDPE----RQNSGKATVLGDAARVL 93 678899*********************885....23444555666665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.0E-8	44	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.67E-11	44	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00132	44	101	No hit	No description
PROSITE profile	PS50888	10.823	46	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0025	52	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MPQVRNQNLG MVADTESSGS LGGSSNAASD KAVDGSLDKR SQEKAPKKTH KAEREKLKRD 60 QLNDLFVELS SMLDPERQNS GKATVLGDAA RVLRDLVSQV ESLRKEQSAL LTERQYVGSE 120 KNELQEENIM LRAQILELHN EICARMGNNH LNQSNLAMSQ PVANNGSNSA TQPVPHHIWG 180 NGPNLAMVHP TNTLSPLHNQ HHQSAGASQV YASRPQELQL FPGTSVSTER ERSRAGSGST 240 PATSSGLTDS LPGQLRLSLP QSSQEESSSG SKKGRKKG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068017	0.0	AK068017.1 Oryza sativa Japonica Group cDNA clone:J013132D22, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015617819.1	0.0	PREDICTED: uncharacterized protein LOC4350864 isoform X1
TrEMBL	I1R1G2	0.0	I1R1G2_ORYGL; Uncharacterized protein
STRING	ORGLA11G0160400.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12959	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	2e-32	bHLH family protein